Environmental DNA metabarcoding as a useful tool for evaluating terrestrial mammal diversity in tropical forests
March 29, 2021
Abstract
Innovative techniques, such as environmental DNA (eDNA) metabarcoding, are now promoting broader biodiversity monitoring at unprecedented scales, due to the reduction in time, presumably lower cost, and methodological efficiency. Our goal was to assess the efficiency of established inventory techniques (live‐trapping grids, pitfall traps, camera trapping, mist‐netting) as well as eDNA for detecting Amazonian mammals. For terrestrial small mammals, we used 32 live‐trapping grids based on Sherman and Tomahawk traps (total effort of 10368 trap‐nights); in addition to 16 pitfall traps (1408 trap‐nights). For bats, we used mist nets at 8 sites (4,800 net hours). For medium and large mammals, we used 72 camera trap stations (5208 camera‐days). We identified vertebrate and mammal taxa based on eDNA analysis (12S region, with V05 and Mamm01 markers) from water samples, including a total of 11 3‐km transects for stagnant water sampling and 7 small streams for running water sampling. A total of 106 mammal species were recorded. Building on sample‐based rarefaction and extrapolation curves, both trapping grids and pitfall were successful, recording 91.16% and 82.1% of the expected species for these techniques (~22 and ~9 species), and 16.98% and 6.60% of the total recorded mammal species, respectively. Mist nets recorded 83.2% of the expected bat species (~48), and 34.91% of the total recorded species. Camera trapping recorded 99.2% of the predicted large and medium‐sized species (~31), and 33.02% of the total recorded species. eDNA recorded 75.4% of the expected mammal species for this technique (~68), and 47.0% of the total recorded species. eDNA resulted in a useful tool that saves on effort and reduces sampling costs. This study is among the first to show the large potential of eDNA metabarcoding for assessing Amazonian mammal communities, providing, in combination with conventional techniques, a rapid overview of mammal diversity with broad applications to monitoring, management and conservation. By including appropriate genetic markers and updated reference databases, eDNA metabarcoding method can be extended to the whole vertebrate community.
Full citation
Mena, J.L., Yagui, H., Tejeda, V., Bonifaz, E., Bellemain, E., Valentini, A., Tobler, M.W., Sanchez-Vendizu, P. & Lyet, A. (2021). Environmental DNA metabarcoding as a useful tool for evaluating terrestrial mammal diversity in tropical forests. Ecological Applications.
The Bird's Head Seascape Marine Protected Area network—Preventing biodiversity and ecosystem service loss amidst rapid change in Papua, Indonesia
March 23, 2021
Abstract
The Bird's Head Seascape (BHS), Papua, Indonesia is located within the epicenter of global marine biodiversity and has been the focus of recent conservation efforts to protect marine resources. Here, we provide an overview of Marine Protected Areas (MPAs) progress in the BHS over the past decade, including establishment history, changes in management effectiveness and ecosystem health, as well as examining trends in tourism growth. While generally viewed as a conservation success story, we reflect on both successes and challenges in the BHS, identifying where we need to continue to improve and adapt in response to rapid economic and environmental change. As of 2020, BHS MPAs cover 5.1 million ha across 23 MPAs. As expected, management effectiveness is steadily increasing in BHS MPAs—although newer MPAs face substantial capacity gaps. Tourism is rapidly growing—with an almost 3,000% increase in tourist visits between 2007 and 2018. Overall, hard coral cover in monitored BHS MPAs remained stable at 33% from 2010 to 2019, although trends in reef fish biomass were more variable. Given continued conservation challenges in the region, BHS MPAs are successfully preventing biodiversity loss while providing ecosystem services for local communities.
Full citation
Purwanto, Andradi-Brown, D.A. et al. (2021). The Bird's Head Seascape Marine Protected Area network—Preventing biodiversity and ecosystem service loss amidst rapid change in Papua, Indonesia. Conservation Science and Practice.
Safeguarding Free-Flowing Rivers: The Global Extent of Free-Flowing Rivers in Protected Areas
March 5, 2021
Abstract
Approximately one-third of long rivers remain free-flowing, and rivers face a range of ongoing and future threats. In response, there is a heightened call for actions to reverse the freshwater biodiversity crisis, including through formal global targets for protection. The Aichi Biodiversity Targets called for the protection of 17% of inland water areas by 2020. Here, we examine the levels and spatial patterns of protection for a specific type of inland water area—rivers designated as free-flowing. Out of a global total of 11.7 million kilometers of rivers, 1.9 million kilometers (16%) are within protected areas and 10.1 million kilometers are classified as free-flowing, with 1.7 million kilometers of the free-flowing kilometers (17%) within protected areas. Thus, at the global level, the proportion of rivers in protected areas is just below the Aichi Target, and the proportion of free-flowing rivers within protected areas equals that target. However, the extent of protection varies widely across river basins, countries, and continents, and many of these geographic units have a level of protection far lower than the target. Further, high discharge mainstem rivers tend to have lower extent of protection. We conclude by reviewing the limitations of measuring river protection by the proportion of river kilometers within protected areas and describe a range of mechanisms that can provide more effective protection. We also propose a set of recommendations for a more comprehensive quantification of global river protection.
Full citation
Opperman, J.J., Shahbol, N., Maynard, J., Grill, G., Higgins, J., Tracey, D. & Thieme, M. (2021). Safeguarding Free-Flowing Rivers: The Global Extent of Free-Flowing Rivers in Protected Areas. Sustainability, 13, 2805.
The Agrarian, Structural and Cultural Constraints of Smallholders’ Readiness for Sustainability Standards Implementation: The Case of Indonesian Sustainable Palm Oil in East Kalimantan
March 1, 2021
Abstract
The expansion of oil palm plantation has caused adverse impacts on the ecosystem. It has been associated with deforestation, biodiversity loss, disturbances to environmental services and livelihood change. The government of Indonesia has made an effort to control the negative effects by issuing relevant policies. One of the policies is Indonesian Sustainable Palm Oil (ISPO)’s sustainability standards to which large-scale plantations and smallholders are obliged to adhere. This study assesses the readiness of two types of smallholders, namely, the nucleus–plasma scheme and independent smallholders to adopt ISPO standards. Using a case study research approach in two oil palm plantation villages in East Kalimantan, the study found out a number of ISPO implementation challenges, grouped into structural and socio-cultural challenges, which make smallholders less ready to adhere to this mandatory policy. Coping with these challenges, this study proposed that land and business legality programs be expedited to strengthen property rights, and that training and education programs be intensified to enhance awareness, knowledge and capacity of smallholders to enable them to comply with sustainability standards.
Full citation
Dharmawan, A.H., Mardiyaningsih, D.I., Rahmadian, F., Yulian, B.E., Komarudin, H., Pacheco, P., Ghazoul, J. & Amalia, R. (2021). The Agrarian, Structural and Cultural Constraints of Smallholders’ Readiness for Sustainability Standards Implementation: The Case of Indonesian Sustainable Palm Oil in East Kalimantan. Sustainability, 13, 2611.
Marine Protected and Conserved Areas in the Time of Covid
March 1, 2021
Abstract
The intersection of potential global targets and commitments for ocean conservation with the COVID-19 pandemic in 2020 has resulted in an opportunity to rethink the future of marine area-based conservation tools, particularly for marine protected and conserved areas (MPCAs). As MPCAs continue to provide essential ecological, social and economic services, current approaches to establishing and managing these areas require an understanding of the factors that drive the pressures they face. We briefly review their status pre-pandemic and provide an overview of the impacts of COVID-19 informed primarily by 15 case studies. Impacts are of two kinds: those affecting livelihoods and well-being of local communities and stakeholders that depend on the MPCA; and those which affect management and governance of the MPCA itself. Responses from managers and communities have addressed: the management of resources; income and food security; monitoring and enforcement; seafood supply chains; and communication amongst managers, community members and other stakeholders. Finally, we discuss innovative approaches and tools for scaling and transformational change, emphasising synergies between management for conservation and management for sustainable livelihoods, and how these relate to the principles of equity and resilience.
Full citation
Phua, C., Andradi-Brown, D.A., Mangubhai, S., Ahmadia, G.N., Mahajan, S.L., Larsen, K., Friel, S., Reichelt, R., Hockings, M., Gill, D., Veverka, L., Anderson, R., Cédrique Augustave, L., Awaludinnoer, Bervoets, T., Brayne, K., Djohani, R., Kawaka, J., Kyne, F., Ndagala, J., Oates, J., Osuka, K., Prvan, M., Shah, N., Vallarola, F., Wenzel, L., Widodo, H. & and Wells, S. (2021). Marine Protected and Conserved Areas in the Time of Covid. PARKS Journal, 27.
Tourism in Protected and Conserved Areas amid the Covid-19 Pandemic
March 1, 2021
Abstract
The COVID-19 pandemic has had a global impact on the tourism sector. With tourism numbers dramatically reduced, millions of jobs could be lost, and progress made in equality and sustainable economic growth could be rolled back. Widespread reports of dramatic changes to protected and conserved1 area visitation have negative consequences for conservation finances, tourism businesses and the livelihoods of people who supply labour, goods and services to tourists and tourism businesses. This paper aims to share experiences from around the world on the impacts of the COVID-19 pandemic on protected area tourism; and considers how to build resilience within protected area tourism as a regenerative conservation tool.
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Spenceley, A., McCool, S., Newsome, D., Báez, A., Barborak, J.R., Blye, C-J., Bricker, K., Sigit, H., Cahyadi, Corrigan, K., Halpenny, E., Hvenegaard, G., Malleret King, D., Leung, Y., Mandić, A., Naidoo, R., Rüede, D., Sano, J., Sarhan, M., Santamaria, V., Beraldo Sousa, T. & Zschiegner, A-K. (2021). Tourism in Protected and Conserved Areas amid the Covid-19 Pandemic. PARKS Journal, 27.
Progress and Pitfalls: A Systematic Review of the Evidence for Agricultural Sustainability Standards
February 23, 2021
Abstract
Over the last decade, there have been increasing calls for robust impact evaluations of voluntary agricultural sustainability standards (VSS’s). In response, this study reviews the literature regarding 13 major agricultural standards, asking: where are certified crops being studied? Which sustainability outcomes and indicators are measured? And finally, what does the current evidence base suggest about VSS outcomes? The analysis of 45 peer-reviewed articles suggests a mismatch between what is certified and what is studied. Some crops and standards are over-represented in the literature as compared to their amount of certified production (e.g. coffee and Fairtrade certification), while others are under-represented (cotton, sugar, cocoa, soy, and palm oil, in addition to Organic certification). The review also identifies countries which appear to be under-represented in the literature, including Brazil, Australia, Malaysia, the Ivory Coast, and the United States. When measuring success, economic indicators are the most frequently evaluated, and only 20% of studies analyze economic, social, and environmental indicators simultaneously. When grouped by case, the indicator results tend to be positive on average (51%), followed by no difference (41%) and negative (8%) outcomes. There are no significant differences among sustainability pillars in terms of the average proportion of positive and negative results. These findings should be interpreted carefully, since the evidence base is heavily weighted towards coffee certification (75% of cases analyzed), and impacts are highly context dependent. Finally, the review identifies best practices in conducting robust evaluations, including the importance of addressing sustainability trade-offs and appropriately measuring environmental outcomes. While significant gaps remain, the findings indicate an increase in research credibly measuring VSS impacts.
Full citation
Traldi, R. (2021). Progress and Pitfalls: A Systematic Review of the Evidence for Agricultural Sustainability Standards. Ecological Indicators 125, 107490.
How to Protect Free Flowing Rivers: The Bita River Ramsar Site as an Example of Science and Management Tools Working Together
February 7, 2021
Abstract
The Orinoco river basin is the third largest river in the world by volume. Its catchment encompasses 27 major sub-basins including the Bita with a catchment area of about 825,000 ha, which originates in the Colombian high plains in the Llanos ecoregion. It has been recognized as a priority area for conservation through different gap analyses and overall determined to have good health according to the Orinoco report card 2016. The natural climate and hydrologic processes, and their synergies with flooded forests, savannas, wetlands, species diversity and local economic activities, are part of a dynamic and sensitive system. With the purpose of conserving the ecological, social and cultural benefits that it brings, the Colombian Government, with the support of regional and local civil society organizations, promoted the designation of a conservation area. Technical exercises were carried out including biological and socioeconomic surveys, local stakeholder consultations and future scenario modeling. In June 2018, the Bita River basin was designated as the largest Ramsar site in Colombia, providing a worldwide example of explicit protection of riverine systems. In order to maintain this free-flowing river, land use and fisheries management, in conjunction with other conservation actions, are being implemented and provide a model of protection for freshwater ecosystems that could be replicated elsewhere.
Full citation
Suárez, C.F., Paez-Vasquez, M., Trujillo, F., Usma, J.S., Thieme, M., Bassi, A.M., Naranjo, L.G., Costanzo, S., Manrique, O., Pallaske, G., Flechas, J. (2021). How to Protect Free Flowing Rivers: The Bita River Ramsar Site as an Example of Science and Management Tools Working Together. Sustainability, 13, 1775.
Reviewing initiatives to promote sustainable supply chains: The case of forest-risk commodities
February 1, 2021
Abstract
The continued growth in demand for a relatively small number of agricultural and forest commodities in global trade has placed increasing pressures on forests across landscapes in the tropics and sub-tropics. These pressures are amplified by growing domestic demand in producing countries. Such trends have led to multiple environmental challenges linked to loss of forests and biodiversity and rising carbon emissions. They also create social challenges including threats to local food security, tenure rights and the livelihoods of indigenous peoples and local communities. Expansion of trade in forest-risk commodities over the past three decades has resulted in increased pressure from civil society organizations, consumers, international banks and shareholders of consumer goods companies to develop and implement a diverse array of instruments and tools to promote sustainable or deforestation-free sourcing, and as a way to reduce exposure to reputational, financial and regulatory risks. Multi-stakeholder platforms and commodity roundtables also emerged, in response to criticisms of government failures. The multiplication of sustainability initiatives has been driven by the growing complexity and diversity of conditions under which agri-food and timber supply chains operate. Private sector actors have increasingly defined and monitored their own sustainability performance by using certification standards or by developing their own procedures and criteria. More recently, a discernible shift toward landscape or jurisdictional approaches is seen as a way to meet sustainability goals. The growing complexity of policy regimes, inevitably, results in ambiguities and can lead to tradeoffs between gains and losses. This review presents a synthesis of the multiple public, private and hybrid governance initiatives that aim to promote sustainable supplies of key forest-risk commodities. It aims to make it easier to understand a vast and rapidly expanding literature. By drawing on the published literature and scientific discussions, including the recent FTA 2020 Science Conference, the review highlights some of the outstanding challenges that urgently need to be addressed in order to achieve the targeted impacts.
Full citation
Wardell, D.A., Piketty, M-G., Lescuyer, G. & Pacheco, P. (2021). Reviewing initiatives to promote sustainable supply chains: The case of forest-risk commodities. The CGIAR Research Program on Forests, Trees and Agroforestry.
Subecoregional Influence on Swift Fox Habitat Suitability
January 1, 2021
Abstract
Grassland-dependent Vulpes velox Say (Swift Foxes) occupy only a portion of their historical range in the North American Great Plains and remaining subpopulations are functionally disconnected due to habitat fragmentation and other barriers. Modeling habitat suitability is critical to identifying sites for habitat conservation and reintroduction and increasing subpopulation connectivity. We used mixed-effects modeling to simultaneously evaluate Swift Fox presence against habitat variables and subecoregional location. Our results show that habitat suitability is dependent on geographic location. Individual subecoregional models were each influenced by land cover and soil composition but varied by dominant soil component and correlation with surrounding land uses. These findings prioritize localized data for species management and predict how changing landscape composition may impact Swift Fox distribution.
Full citation
Olimb, S.K., Schwalm, D.L., and K.L.S. Bly. (2021). Subecoregional Influence on Swift Fox Habitat Suitability. Prairie Naturalist 53: 1-15.